Gb_20805 (ATPUB17, PUB17)

Aliases : ATPUB17, PUB17

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_20805
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AT3G46510	PUB13, ATPUB13	plant U-box 13	0.04	OrthoFinder output from all 47 species
Aev_g04770	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g08869	PUB15	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16049	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Als_g26320	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene36187.t1	ATPUB17, PUB17,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44183.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44184.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44185.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene65975.t1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.20	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g08066	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22153	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.04	OrthoFinder output from all 47 species
Gb_10627	PUB8, B80	U-box domain-containing protein 13 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Gb_29276	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os08g32060.1	LOC_Os08g32060	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
MA_10431607g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
MA_69133g0010	PUB14, ATPUB14	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Ore_g05525	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g12553	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g38004	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc09g018230.1.1	Solyc09g018230	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0043531	ADP binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	417	454
IPR003613	Ubox_domain	283	354

External Links

No external refs found!

Gb_20805 (ATPUB17, PUB17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation