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  5. Gb_21439

Gb_21439


Description : RNA editing factor (OTP82)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21439
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Adi_g096037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100866 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28610.t2 REME1, Aspi01Gene28610 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.03 OrthoFinder output from all 47 species
Ceric.31G002400.1 Ceric.31G002400 not classified & original description: pacid=50574432... 0.04 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.03 OrthoFinder output from all 47 species
Dac_g08183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
GSVIVT01019231001 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
LOC_Os04g14450.1 LOC_Os04g14450 Pentatricopeptide repeat-containing protein At4g14820... 0.05 OrthoFinder output from all 47 species
Len_g18487 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Msp_g24056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12406 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g53095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008413 No alias not classified & original description: CDS=1-1578 0.03 OrthoFinder output from all 47 species
Spa_g10182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 473
IPR002885 Pentatricopeptide_repeat 225 270
IPR002885 Pentatricopeptide_repeat 326 373
IPR002885 Pentatricopeptide_repeat 124 171
IPR032867 DYW_dom 600 724
IPR002885 Pentatricopeptide_repeat 502 525
IPR002885 Pentatricopeptide_repeat 199 220
No external refs found!