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  5. Gb_21789

Gb_21789 (AGO7, ZIP)


Aliases : AGO7, ZIP

Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21789

Target Alias Description ECC score Gene Family Method Actions
Als_g41650 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29036.t1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
MA_123150g0010 AGO7, ZIP siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Pnu_g18269 AGO6 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Smo446086 AGO1 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Spa_g31295 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032474 Argonaute_N 171 318
IPR003165 Piwi 683 987
IPR032472 ArgoL2 526 572
IPR014811 ArgoL1 329 378
IPR003100 PAZ_dom 401 507
No external refs found!