Gb_22830 (UPF1, ATUPF1, LBA1)

Aliases : UPF1, ATUPF1, LBA1

Description : UPF1 Nonsense-Mediated mRNA Decay effector protein

Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_22830
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00142490	UPF1, ATUPF1,...	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.07	OrthoFinder output from all 47 species
AT5G47010	UPF1, ATUPF1, LBA1	RNA helicase, putative	0.07	OrthoFinder output from all 47 species
Adi_g055495	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.07	OrthoFinder output from all 47 species
Aev_g29734	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.06	OrthoFinder output from all 47 species
Ala_g16050	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.07	OrthoFinder output from all 47 species
Ala_g33995	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15234	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.05	OrthoFinder output from all 47 species
Als_g22322	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.06	OrthoFinder output from all 47 species
Aob_g17076	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.02	OrthoFinder output from all 47 species
Aop_g14327	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0128.g048821	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Cba_g31771	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Ceric.37G063700.1	UPF1, ATUPF1,...	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.09	OrthoFinder output from all 47 species
Cre02.g092500	UPF1, ATUPF1, LBA1	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.01	OrthoFinder output from all 47 species
Dcu_g11492	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.07	OrthoFinder output from all 47 species
Dcu_g20574	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.07	OrthoFinder output from all 47 species
Dde_g51663	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Ehy_g19605	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.05	OrthoFinder output from all 47 species
GSVIVT01013247001	UPF1, ATUPF1, LBA1	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.04	OrthoFinder output from all 47 species
LOC_Os07g31340.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.06	OrthoFinder output from all 47 species
Lfl_g04285	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.05	OrthoFinder output from all 47 species
MA_10326503g0010	UPF1, ATUPF1, LBA1	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
MA_10436671g0010	UPF1, ATUPF1, LBA1	Regulator of nonsense transcripts 1 homolog...	0.07	OrthoFinder output from all 47 species
Mp1g01200.1	UPF1, ATUPF1, LBA1	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
Msp_g13210	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Pir_g11844	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Ppi_g52670	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Sam_g25380	No alias	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.05	OrthoFinder output from all 47 species
Sam_g25381	No alias	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Sam_g29675	No alias	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Solyc08g007110.4.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.02	OrthoFinder output from all 47 species
Solyc08g077420.3.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.08	OrthoFinder output from all 47 species
Spa_g08453	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Spa_g48749	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.02	OrthoFinder output from all 47 species
Spa_g48750	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Tin_g07774	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Zm00001e010427_P002	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	477	562
IPR041679	DNA2/NAM7-like_C	688	883
IPR041677	DNA2/NAM7_AAA_11	577	678
IPR018999	UPF1_CH/ZBD	125	278
IPR040812	UPF1_1B_dom	330	419

External Links

No external refs found!

Gb_22830 (UPF1, ATUPF1, LBA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation