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  5. Gb_23411

Gb_23411


Description : C3H zinc finger transcription factor


Gene families : OG0005342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23411

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00051190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
Aob_g17336 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Aob_g33498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04617 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Cre02.g101950 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
Dac_g22149 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dde_g24523 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Ehy_g01559 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
GSVIVT01025178001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.07 OrthoFinder output from all 47 species
LOC_Os04g01480.1 LOC_Os04g01480 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp5g00110.1 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Ore_g17413 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Sam_g25094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g069340.2.1 Solyc11g069340 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008173 RNA methyltransferase activity IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 58 85
IPR010280 U5_MeTrfase_fam 736 779
IPR025714 Methyltranfer_dom 589 647
No external refs found!