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  5. Gb_24633

Gb_24633


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 353.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24633

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112586 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33372 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27582 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g27846 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37347 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37575 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g42859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07474 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27362 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0519.g075227 No alias not classified & original description: CDS=1-1455 0.06 OrthoFinder output from all 47 species
Cba_g04081 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g04687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13422 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19787 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g20154 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g26541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g34636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75809 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G069100.1 CRR22, Ceric.13G069100 not classified & original description: pacid=50635982... 0.03 OrthoFinder output from all 47 species
Ceric.32G014100.1 Ceric.32G014100 not classified & original description: pacid=50597391... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08533 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g16074 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01028747001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_08569 OTP84 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_09793 No alias RNA editing factor (MEF7) 0.05 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_28288 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_37102 OTP84 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
LOC_Os03g64370.1 LOC_Os03g64370 Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
Len_g17565 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_30632g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 OrthoFinder output from all 47 species
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.08 OrthoFinder output from all 47 species
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Msp_g06173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11341 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g26145 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g28505 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g28765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g15562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18275 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22141 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22460 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34904 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18373 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc07g008480.3.1 Solyc07g008480 Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
Spa_g53142 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 173 218
IPR002885 Pentatricopeptide_repeat 273 321
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 450 477
IPR002885 Pentatricopeptide_repeat 49 74
IPR002885 Pentatricopeptide_repeat 377 406
No external refs found!