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  5. Gb_27377

Gb_27377


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 658.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27377

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00259620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g35030,... 0.04 OrthoFinder output from all 47 species
AMTR_s00088p00046850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Ala_g16833 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07022 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18398 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33541 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g13608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29889 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_01174 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
Gb_08772 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
Gb_18149 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Gb_21270 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.08 OrthoFinder output from all 47 species
Gb_21567 CRR22 RNA editing factor (MEF19) 0.05 OrthoFinder output from all 47 species
Gb_21824 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_23320 CRR22 RNA editing factor (OTP82) 0.08 OrthoFinder output from all 47 species
Gb_26694 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.08 OrthoFinder output from all 47 species
Gb_27291 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.1 OrthoFinder output from all 47 species
Gb_28037 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_28390 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_29557 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_31474 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_31702 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_32017 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_32921 OTP84 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_33064 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_33959 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_34299 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_36538 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_37509 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Gb_38068 OTP86 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_38158 CRR2 OTP70 plastidial RNA splicing factor 0.08 OrthoFinder output from all 47 species
Gb_38301 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_41325 CRR22 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Len_g09780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
MA_210089g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.1 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_87646g0010 No alias RNA editing factor (MEF13) 0.05 OrthoFinder output from all 47 species
Sam_g03099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.12 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.14 OrthoFinder output from all 47 species
Tin_g44240 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 655 678
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 450 475
IPR002885 Pentatricopeptide_repeat 392 418
IPR002885 Pentatricopeptide_repeat 128 153
IPR002885 Pentatricopeptide_repeat 228 255
IPR002885 Pentatricopeptide_repeat 419 448
IPR002885 Pentatricopeptide_repeat 287 312
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 580 628
IPR002885 Pentatricopeptide_repeat 154 201
IPR032867 DYW_dom 753 877
No external refs found!