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  5. Gb_27840

Gb_27840


Description : solute transporter (AAAP)


Gene families : OG0000278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27840
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00249520 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00075260 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.04 OrthoFinder output from all 47 species
AT2G39130 No alias Transmembrane amino acid transporter family protein 0.04 OrthoFinder output from all 47 species
AT2G41190 No alias Transmembrane amino acid transporter family protein 0.03 OrthoFinder output from all 47 species
AT3G09330 No alias Transmembrane amino acid transporter family protein 0.03 OrthoFinder output from all 47 species
Adi_g104357 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03383 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08352 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010795 No alias solute transporter *(AAAP) & original description: CDS=35-1210 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010835 No alias solute transporter *(AAAP) & original description: CDS=1-1098 0.03 OrthoFinder output from all 47 species
Azfi_s0120.g046809 No alias solute transporter *(AAAP) & original description: CDS=42-1736 0.03 OrthoFinder output from all 47 species
Azfi_s0870.g090592 No alias solute transporter *(AAAP) & original description: CDS=69-1490 0.03 OrthoFinder output from all 47 species
Ceric.04G003800.1 Ceric.04G003800 solute transporter *(AAAP) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.31G054000.1 Ceric.31G054000 solute transporter *(AAAP) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g14297 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011400001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
GSVIVT01019976001 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
GSVIVT01020259001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
GSVIVT01020261001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41420.1 LOC_Os01g41420 solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species
LOC_Os04g38660.1 LOC_Os04g38660 solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species
LOC_Os04g38670.1 LOC_Os04g38670 Amino acid transporter AVT1I OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g38680.1 LOC_Os04g38680 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
MA_10430942g0030 No alias Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_670490g0010 No alias Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g26461 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19449 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36554 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43893 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43894 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04230 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09068 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g063050.1.1 Solyc03g063050 Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g061270.2.1 Solyc06g061270 solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
Spa_g21494 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030719_P001 Zm00001e030719 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
Zm00001e039154_P004 Zm00001e039154 solute transporter (AAAP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 114 497
No external refs found!