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  5. Gb_28132

Gb_28132


Description : no hits & (original description: none)


Gene families : OG0000143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28132
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00269120 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00012p00212610 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G77145 No alias Protein of unknown function (DUF506) 0.03 OrthoFinder output from all 47 species
Aev_g28669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025546 No alias not classified & original description: CDS=508-1674 0.03 OrthoFinder output from all 47 species
Cba_g04914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G087300.1 Ceric.01G087300 not classified & original description: pacid=50591762... 0.03 OrthoFinder output from all 47 species
Ceric.35G024800.1 Ceric.35G024800 not classified & original description: pacid=50581898... 0.03 OrthoFinder output from all 47 species
Ceric.38G003400.1 Ceric.38G003400 not classified & original description: pacid=50580583... 0.02 OrthoFinder output from all 47 species
Cre15.g634750 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01016558001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01026527001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_09444 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_34690 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g25020.1 LOC_Os11g25020 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_32290g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_659011g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g06137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09187 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g34113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15663 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020224 No alias not classified & original description: CDS=806-2086 0.04 OrthoFinder output from all 47 species
Solyc06g005480.3.1 Solyc06g005480 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g08735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018497_P001 Zm00001e018497 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e019800_P002 Zm00001e019800 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006502 PDDEXK-like 104 320
No external refs found!