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  5. Gb_28770

Gb_28770


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 611.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28770

Target Alias Description ECC score Gene Family Method Actions
Ala_g24714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_30097 CRR22 RNA editing factor (CRR21) 0.04 OrthoFinder output from all 47 species
Gb_30147 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_38248 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_38417 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Gb_41234 OTP86 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_41454 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.05 OrthoFinder output from all 47 species
MA_10357393g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g33170... 0.08 OrthoFinder output from all 47 species
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 OrthoFinder output from all 47 species
MA_136498g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_16339g0010 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_20899g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_27138g0010 No alias RNA editing factor (MEF7) 0.04 OrthoFinder output from all 47 species
MA_28390g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_412g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_452577g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
MA_87646g0010 No alias RNA editing factor (MEF13) 0.04 OrthoFinder output from all 47 species
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_946216g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_957690g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Solyc03g097850.1.1 Solyc03g097850 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
Solyc06g053850.4.1 Solyc06g053850 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc06g066080.1.1 OTP85, Solyc06g066080 Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
Solyc06g082880.2.1 Solyc06g082880 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Solyc09g075170.1.1 Solyc09g075170 Pentatricopeptide repeat-containing protein At3g62890... 0.04 OrthoFinder output from all 47 species
Solyc11g067210.1.1 Solyc11g067210 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Solyc12g099620.1.1 Solyc12g099620 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 316 344
IPR002885 Pentatricopeptide_repeat 591 618
IPR002885 Pentatricopeptide_repeat 524 548
IPR002885 Pentatricopeptide_repeat 258 288
IPR002885 Pentatricopeptide_repeat 230 257
IPR032867 DYW_dom 623 747
IPR002885 Pentatricopeptide_repeat 450 498
IPR002885 Pentatricopeptide_repeat 154 202
IPR002885 Pentatricopeptide_repeat 349 396
No external refs found!