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  5. Gb_29428

Gb_29428


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 162.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29428
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g022676 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g042987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11244 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene69044.t1 Aspi01Gene69044 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0195.g057243 No alias not classified & original description: CDS=263-1516 0.04 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.04 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.05 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g03813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_79622g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Msp_g20052 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.03 OrthoFinder output from all 47 species
Sam_g43568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21333 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 132 201
IPR000504 RRM_dom 44 111
No external refs found!