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  5. Gb_33411

Gb_33411 (EMB2261)


Aliases : EMB2261

Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 617.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33411
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.06 OrthoFinder output from all 47 species
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00115350 RARE1,... Pentatricopeptide repeat-containing protein At5g13270,... 0.07 OrthoFinder output from all 47 species
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00240190 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00169670 CRR22,... Pentatricopeptide repeat-containing protein At2g17210... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00127300 MEF22,... Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g104520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g36953 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07181 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67304 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.06 OrthoFinder output from all 47 species
Dcu_g22538 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35769 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40896 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47810 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50137 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g04434 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.04 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
Gb_02808 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Gb_03579 No alias RNA editing factor (MEF12) 0.05 OrthoFinder output from all 47 species
Gb_04381 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
Gb_05259 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.06 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_34248 CRR2 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_39702 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_40121 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.04 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
LOC_Os11g01836.1 LOC_Os11g01836 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g27681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428121g0010 REME1 Pentatricopeptide repeat-containing protein At4g37170... 0.06 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_10429540g0010 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.05 OrthoFinder output from all 47 species
MA_10429958g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
MA_106123g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_11454g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
MA_114565g0020 OTP84 Pentatricopeptide repeat-containing protein At5g16860... 0.06 OrthoFinder output from all 47 species
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_185098g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.06 OrthoFinder output from all 47 species
MA_22485g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_3612g0010 CRR22 Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_475393g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
MA_481619g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
MA_6511g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_81436g0010 OTP84 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
MA_86894g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_9360929g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_953793g0020 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Nbi_g04943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15421 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27954 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31871 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012842 CRR2 not classified & original description: CDS=114-1901 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021137 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-933 0.04 OrthoFinder output from all 47 species
Sam_g28859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo26993 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Smo96499 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Spa_g19054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g16966 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30384 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species
Zm00001e016542_P001 Zm00001e016542 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Zm00001e032242_P001 Zm00001e032242 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Zm00001e032485_P001 EMB2744, Zm00001e032485 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
Zm00001e038850_P001 EMB2758, Zm00001e038850 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
Zm00001e040418_P001 Zm00001e040418 Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 267 293
IPR002885 Pentatricopeptide_repeat 396 424
IPR002885 Pentatricopeptide_repeat 368 394
IPR002885 Pentatricopeptide_repeat 295 325
IPR032867 DYW_dom 802 924
IPR002885 Pentatricopeptide_repeat 113 173
IPR002885 Pentatricopeptide_repeat 192 238
IPR002885 Pentatricopeptide_repeat 627 673
IPR002885 Pentatricopeptide_repeat 425 472
IPR002885 Pentatricopeptide_repeat 526 572
No external refs found!