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  5. Gb_33485

Gb_33485


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 220.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33485

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT4G14300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g008733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g013859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085912 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g110734 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35979 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19163 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.05 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.04 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.02 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03771 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_79622g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.03 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e011415_P001 Zm00001e011415 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e033045_P001 Zm00001e033045 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 107 167
No external refs found!