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  5. Gb_33693

Gb_33693


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 692.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33693
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.04 OrthoFinder output from all 47 species
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
AMTR_s00039p00130050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00058270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00130p00019530 DOT4,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Ala_g02572 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g12477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17653 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24410 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g32755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35750 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36517 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19032 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g19255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26680 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g30901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0519.g075227 No alias not classified & original description: CDS=1-1455 0.06 OrthoFinder output from all 47 species
Cba_g05866 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G040900.1 Ceric.11G040900 not classified & original description: pacid=50596742... 0.04 OrthoFinder output from all 47 species
Ceric.36G017300.1 Ceric.36G017300 not classified & original description: pacid=50568624... 0.05 OrthoFinder output from all 47 species
Dac_g12454 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g46003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01002530001 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.04 OrthoFinder output from all 47 species
GSVIVT01003124001 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.08 OrthoFinder output from all 47 species
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.06 OrthoFinder output from all 47 species
GSVIVT01011887001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
GSVIVT01015468001 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.05 OrthoFinder output from all 47 species
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
GSVIVT01024061001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.11 OrthoFinder output from all 47 species
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01031733001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
GSVIVT01032394001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01033304001 CRR28 Pentatricopeptide repeat-containing protein At2g02980,... 0.05 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
GSVIVT01036943001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.06 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.06 OrthoFinder output from all 47 species
GSVIVT01037332001 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
GSVIVT01037562001 PDE247, CLB19 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_01174 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_04894 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_16017 CRR22 RNA editing factor (MEF19) 0.06 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_19924 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_23934 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.08 OrthoFinder output from all 47 species
Gb_27469 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_27521 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_32457 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_35202 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_39440 CRR22 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Gb_39725 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_40047 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_40121 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_40432 CRR22 RNA editing factor (MEF19) 0.06 OrthoFinder output from all 47 species
Gb_40434 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
LOC_Os03g56850.1 LOC_Os03g56850 Pentatricopeptide repeat-containing protein At4g21300... 0.07 OrthoFinder output from all 47 species
Len_g03387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17755 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18579 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18592 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19000 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g19028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21362 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22137 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g33758 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44152 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g49921 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_131437g0010 No alias RNA editing factor (MEF3) 0.04 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.12 OrthoFinder output from all 47 species
MA_20899g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_30632g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_38687g0010 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.04 OrthoFinder output from all 47 species
MA_412g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_656915g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
MA_916566g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.08 OrthoFinder output from all 47 species
MA_956160g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
MA_957690g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Msp_g23175 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g45879 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06311 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21727 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g43448 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007839 No alias not classified & original description: CDS=1-7737 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010845 No alias not classified & original description: CDS=1-381 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019636 No alias not classified & original description: CDS=1-303 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021792 EMB2758 not classified & original description: CDS=1-2004 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0178.g024723 No alias not classified & original description: CDS=1-3261 0.04 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Tin_g03535 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05650 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17460 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
Zm00001e023504_P001 CRR22, Zm00001e023504 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Zm00001e030831_P001 Zm00001e030831 Pentatricopeptide repeat-containing protein At3g20730... 0.03 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.07 OrthoFinder output from all 47 species
Zm00001e035654_P001 EMB2758, Zm00001e035654 Pentatricopeptide repeat-containing protein At4g33990... 0.11 OrthoFinder output from all 47 species
Zm00001e036301_P001 Zm00001e036301 Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Zm00001e037600_P001 Zm00001e037600 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 229 259
IPR002885 Pentatricopeptide_repeat 593 624
IPR002885 Pentatricopeptide_repeat 131 179
IPR002885 Pentatricopeptide_repeat 496 543
IPR002885 Pentatricopeptide_repeat 729 777
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 628 675
IPR002885 Pentatricopeptide_repeat 364 410
IPR002885 Pentatricopeptide_repeat 437 464
IPR002885 Pentatricopeptide_repeat 803 827
IPR002885 Pentatricopeptide_repeat 467 495
IPR032867 DYW_dom 902 1026
No external refs found!