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  5. Gb_35079

Gb_35079


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 148.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35079

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g008733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g116756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g08655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35979 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19163 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08911 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.05 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.02 OrthoFinder output from all 47 species
Cba_g09693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.05 OrthoFinder output from all 47 species
Ceric.04G042600.1 Ceric.04G042600 not classified & original description: pacid=50631655... 0.02 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.04 OrthoFinder output from all 47 species
Ceric.14G090500.1 Ceric.14G090500 not classified & original description: pacid=50634831... 0.07 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.03 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ceric.30G049700.1 Ceric.30G049700 not classified & original description: pacid=50608801... 0.04 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.04 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04585 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Len_g03813 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_36839g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_79622g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g00898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g22584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c26_4470V3.1 Pp3c26_4470 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g05151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014264 No alias not classified & original description: CDS=1-1203 0.02 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 73
IPR000504 RRM_dom 187 245
No external refs found!