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  5. Gb_36673

Gb_36673


Description : IMB1 nucleocytoplasmic import karyopherin


Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36673

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00188470 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Adi_g102316 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Adi_g102317 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.05 OrthoFinder output from all 47 species
Als_g03885 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Als_g32943 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.05 OrthoFinder output from all 47 species
Aop_g04439 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Cba_g02724 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G004800.1 Ceric.10G004800 nucleocytoplasmic import karyopherin *(IMB1) & original... 0.06 OrthoFinder output from all 47 species
Ceric.28G014800.1 Ceric.28G014800 nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Dac_g07112 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g09212 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os05g28510.4 LOC_Os05g28510 IMB1 nucleocytoplasmic import karyopherin 0.07 OrthoFinder output from all 47 species
Ore_g30274 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Ore_g40488 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g16481 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g12426 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Sam_g52654 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Smo124593 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Zm00001e027224_P001 Zm00001e027224 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Zm00001e031516_P001 Zm00001e031516 IMB1 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 112 191
No external refs found!