Aliases : RAB1C, ATRAB1C, ATRABD2C
Description : D-class RAB GTPase
Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_37705 | |
| Cluster | HCCA: Cluster_118 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G02130 | ATRAB1B, RABD2A,... | RAS 5 | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g013329 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g046907 | RAB1C, ATRAB1C, ATRABD2C | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g105164 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.23G069500.1 | RAB1C, ATRAB1C,... | D-class RAB GTPase & original description:... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01023224001 | ATFP8, RABD1, ATRABD1 | Vesicle trafficking.regulation of membrane tethering and... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g40698 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g14298 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g04889 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g05020 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g54859 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g003026 | ATRAB1A, ATRABD2B, RAB1A | not classified & original description: CDS=1-711 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g090170.4.1 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.01 | OrthoFinder output from all 47 species | |
| Solyc08g078070.4.1 | RAB1C, ATRAB1C,... | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g03863 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e015303_P001 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEA | Interproscan |
| MF | GO:0005525 | GTP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006486 | protein glycosylation | IEP | HCCA |
| BP | GO:0007021 | tubulin complex assembly | IEP | HCCA |
| BP | GO:0007023 | post-chaperonin tubulin folding pathway | IEP | HCCA |
| MF | GO:0008417 | fucosyltransferase activity | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| MF | GO:0048487 | beta-tubulin binding | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0070085 | glycosylation | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001806 | Small_GTPase | 10 | 170 |
| No external refs found! |
