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  5. Gb_38377

Gb_38377 (TCP2)


Aliases : TCP2

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38377
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT1G53230 TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.02 OrthoFinder output from all 47 species
AT3G02150 TCP13, TFPD, PTF1 plastid transcription factor 1 0.05 OrthoFinder output from all 47 species
Aev_g07745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30836 TCP10 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g18903 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18877 TCP4, MEE35 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07553 TCP3 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02912.t1 ATTCP24, TCP24,... TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02917.t2 TCP3, Aspi01Gene02917 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50266.t1 TCP2, Aspi01Gene50266 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64947.t1 TCP3, Aspi01Gene64947 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011962001 TCP12, BRC2 RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Gb_37187 TCP3 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
LOC_Os03g57190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Len_g11401 TCP5 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_101752g0020 ATTCP24, TCP24 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_75780g0010 TCP2 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Ore_g05160 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02212 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g077250.2.1 TCP4, MEE35,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Solyc05g009900.3.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc07g053410.4.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Spa_g55051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03446 TCP3 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009811_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e019734_P001 TCP5, Zm00001e019734 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e032821_P001 TCP2, Zm00001e032821 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 127 277
No external refs found!