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  5. Gb_39308

Gb_39308


Description : no hits & (original description: none)


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39308

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g117075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0162.g054145 No alias not classified & original description: CDS=1-1809 0.03 OrthoFinder output from all 47 species
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.05 OrthoFinder output from all 47 species
Cre04.g213905 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01023998001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g30370.1 LOC_Os10g30370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g58331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g34973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g19710.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g07209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13992 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29001 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e004710_P005 Zm00001e004710 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 439 556
IPR000504 RRM_dom 563 615
IPR000504 RRM_dom 349 419
IPR000504 RRM_dom 253 313
No external refs found!