Aliases : ARF6
Description : transcription factor (ARF)
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00200760 | ARF4,... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G19850 | MP, IAA24, ARF5 | Transcriptional factor B3 family protein /... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G59750 | ARF1 | auxin response factor 1 | 0.04 | OrthoFinder output from all 47 species | |
| AT5G37020 | ARF8, ATARF8 | auxin response factor 8 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g054964 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g061151 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g14536 | ARF1 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g14726 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32730 | TIR5, MSG1,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33345 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g22075 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g12700 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g12905 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70630 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0011.g012740 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: CDS=1-2724 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0038.g026103 | ARF6 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0185.g056651 | ARF6 | ARF-type transcription factor & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0384.g067487 | ARF8, ATARF8 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G034300.1 | ARF16, Ceric.18G034300 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.21G089900.1 | HSS, ARF1-BP,... | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g05781 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g14113 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g20778 | ARF14 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01004942001 | HSS, ARF1-BP, ARF2, ORE14 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020805001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01021552001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01021553001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025159001 | ARF4 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025198001 | ARF10 | RNA biosynthesis.transcriptional activation.B3... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01032251001 | ARF19, IAA22, ARF11 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035204001 | ARF8, ATARF8 | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01035205001 | ARF8, ATARF8 | Auxin response factor 12 OS=Oryza sativa subsp. japonica | 0.03 | OrthoFinder output from all 47 species | |
| Gb_23186 | HSS, ARF1-BP, ARF2, ORE14 | transcription factor (ARF) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os01g48060.1 | ARF3, ETT, LOC_Os01g48060 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g35140.1 | ARF1, LOC_Os02g35140 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g36054.1 | ARF1, LOC_Os04g36054 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g56850.1 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g57610.1 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g43920.1 | ARF3, ETT, LOC_Os05g43920 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g46410.1 | ARF6, LOC_Os06g46410 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os11g32110.1 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g41950.1 | ARF6, LOC_Os12g41950 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431695g0010 | ARF19, IAA22, ARF11 | Auxin response factor 19 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432580g0010 | HSS, ARF1-BP, ARF2, ORE14 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| MA_40335g0010 | HSS, ARF1-BP, ARF2, ORE14 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| MA_85955g0010 | ARF19, IAA22, ARF11 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g12750.1 | ARF6 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g15236 | ARF1 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g08684 | ARF6 | ARF-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pnu_g06380 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g19455 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007919 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: CDS=1-3501 | 0.03 | OrthoFinder output from all 47 species | |
| Smo438333 | TIR5, MSG1,... | Auxin response factor 11 OS=Oryza sativa subsp. indica | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g037530.3.1 | ARF8, ATARF8,... | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g118290.3.1 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g047460.3.1 | ARF19, IAA22,... | transcription factor (ARF) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc05g056040.3.1 | ARF11, Solyc05g056040 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g016180.3.1 | ARF19, IAA22,... | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g069190.2.1 | ARF4, Solyc11g069190 | transcription factor (ARF) | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g29254 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e003229_P002 | ARF6, Zm00001e003229 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e006577_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e018126_P002 | ARF6, Zm00001e018126 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e020205_P004 | ARF3, ETT, Zm00001e020205 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e030325_P003 | ARF6, Zm00001e030325 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e032135_P002 | ARF3, ETT, Zm00001e032135 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e032423_P002 | ARF3, ETT, Zm00001e032423 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e041910_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | HCCA |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| BP | GO:0000723 | telomere maintenance | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEP | HCCA |
| MF | GO:0004143 | diacylglycerol kinase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004673 | protein histidine kinase activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007165 | signal transduction | IEP | HCCA |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | HCCA |
| BP | GO:0007205 | protein kinase C-activating G protein-coupled receptor signaling pathway | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
| BP | GO:0009725 | response to hormone | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0010033 | response to organic substance | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032200 | telomere organization | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0042221 | response to chemical | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140299 | small molecule sensor activity | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033389 | AUX/IAA_dom | 414 | 501 |
| No external refs found! |
