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  5. Gb_40380

Gb_40380


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 567.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40380

Target Alias Description ECC score Gene Family Method Actions
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01000420001 MEF22 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
GSVIVT01015087001 CRR2 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
GSVIVT01024915001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01031265001 LPA66 Pentatricopeptide repeat-containing protein At5g66520... 0.06 OrthoFinder output from all 47 species
Gb_14392 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_21351 VAC1, ECB2, ATECB2 RNA editing factor (CRR21) 0.04 OrthoFinder output from all 47 species
Gb_24126 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_26154 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_28037 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_28902 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.04 OrthoFinder output from all 47 species
Gb_38301 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_38679 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_41325 CRR22 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
MA_100606g0010 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_10277392g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_10426261g0020 CRR22 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
MA_10428121g0010 REME1 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_10429540g0010 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.06 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_10430355g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_11138g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_111990g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
MA_118886g0010 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_121102g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_13022g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.09 OrthoFinder output from all 47 species
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_16226g0010 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
MA_185098g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.05 OrthoFinder output from all 47 species
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
MA_205762g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_20899g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_217g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.1 OrthoFinder output from all 47 species
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_27726g0010 VAC1, ECB2, ATECB2 RNA editing factor (ECB2/VAC1) 0.08 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_30632g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_33151g0010 OTP86 Pentatricopeptide repeat-containing protein At1g18485... 0.06 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.06 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 OrthoFinder output from all 47 species
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.1 OrthoFinder output from all 47 species
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.08 OrthoFinder output from all 47 species
MA_465411g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_59148g0010 CRR22 RNA editing factor (MEF11) 0.03 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.08 OrthoFinder output from all 47 species
MA_6511g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_73205g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_74986g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
MA_83662g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_96662g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_97789g0010 CRR22 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Zm00001e001200_P001 Zm00001e001200 Pentatricopeptide repeat-containing protein At5g59600... 0.02 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Zm00001e015358_P001 Zm00001e015358 Pentatricopeptide repeat-containing protein At5g39350... 0.03 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.03 OrthoFinder output from all 47 species
Zm00001e038919_P001 Zm00001e038919 Pentatricopeptide repeat-containing protein At5g15300... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 409 442
IPR002885 Pentatricopeptide_repeat 478 507
IPR002885 Pentatricopeptide_repeat 447 476
IPR002885 Pentatricopeptide_repeat 713 737
IPR002885 Pentatricopeptide_repeat 72 130
IPR002885 Pentatricopeptide_repeat 313 360
IPR002885 Pentatricopeptide_repeat 538 584
IPR002885 Pentatricopeptide_repeat 251 283
IPR002885 Pentatricopeptide_repeat 639 687
IPR002885 Pentatricopeptide_repeat 150 196
No external refs found!