Gb_40422


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 187.0)


Gene families : OG0000004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40422

Target Alias Description ECC score Gene Family Method Actions
Aev_g13986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g22867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g25745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30181 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33931 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38229 ORF111A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g39775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g45052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62932 CRK8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34048.t1 Aspi01Gene34048 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g09885 CRK8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g31142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g54539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g70082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g48740 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_01443 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_02582 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 OrthoFinder output from all 47 species
Gb_02641 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_03297 ORF240B Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_06723 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_08957 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_15114 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 OrthoFinder output from all 47 species
Gb_23260 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_24037 CRK8 Retrovirus-related Pol polyprotein from transposon RE2... 0.05 OrthoFinder output from all 47 species
Gb_27587 CRK8 Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_28128 CRK8 Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_31778 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.09 OrthoFinder output from all 47 species
Gb_33898 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_40419 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 OrthoFinder output from all 47 species
Ore_g18813 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61926 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c22_3860V3.1 Pp3c22_3860 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c8_15930V3.1 Pp3c8_15930 No annotation 0.03 OrthoFinder output from all 47 species
Solyc11g045435.1.1 CRK8, Solyc11g045435 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA

No InterPro domains available for this sequence

No external refs found!