1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e000116_P001

Zm00001e000116_P001 (AtPP2-A13, PP2-A13,...)


Aliases : AtPP2-A13, PP2-A13, Zm00001e000116

Description : component FBX of SCF E3 ubiquitin ligase complex


Gene families : OG0000279 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000116_P001
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G63090 PP2-A11, AtPP2-A11 phloem protein 2-A11 0.03 OrthoFinder output from all 47 species
AT2G02300 PP2-B5, AtPP2-B5 phloem protein 2-B5 0.04 OrthoFinder output from all 47 species
AT3G61060 AtPP2-A13, PP2-A13 phloem protein 2-A13 0.03 OrthoFinder output from all 47 species
Aev_g06546 PP2-A15, AtPP2-A15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07837 PP2-A11, AtPP2-A11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55189.t2 ATPP2-A4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55194.t1 AtPP2-B8,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09552 MEE66 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01003906001 AtPP2-B1, PP2-B1 F-box protein PP2-B1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01010614001 PP2-A11, AtPP2-A11 Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
GSVIVT01012084001 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01027514001 AtPP2-A13, PP2-A13 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os01g06500.1 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56800.1 AtPP2-B2,... Putative F-box protein PP2-B2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g05480.1 AtPP2-B1,... Putative F-box protein PP2-B2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g24670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g08220.1 PP2-A15, AtPP2-A15 F-box protein PP2-A15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g20367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002865 No alias not classified & original description: CDS=117-1025 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017743 PP2-A15, AtPP2-A15 not classified & original description: CDS=224-1150 0.02 OrthoFinder output from all 47 species
Solyc02g031750.3.1 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g069020.3.1 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g069030.3.1 PP2-A1,... Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc02g069040.4.1 Solyc02g069040 Lectin OS=Luffa acutangula (sp|c0hjv2|lec_lufac : 91.7) 0.05 OrthoFinder output from all 47 species
Solyc10g017960.2.1 AtPP2-A13,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025886 PP2-like 125 285
No external refs found!