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  5. Zm00001e000416_P002

Zm00001e000416_P002 (Zm00001e000416)


Aliases : Zm00001e000416

Description : platform ATPase (CDC48)


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000416_P002
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.06 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
Adi_g035605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g114666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01451 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09138 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33182 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G000400.1 emb1354, CDC48C,... not classified & original description: pacid=50592359... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000525.10 emb1354, CDC48C Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Dac_g09762 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02340 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09970 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g36367 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19173 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g00760 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13016 CIP111 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g17721 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.07 OrthoFinder output from all 47 species
Solyc06g074980.3.1 Solyc06g074980 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Tin_g15369 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 31 112
IPR041569 AAA_lid_3 674 714
IPR041569 AAA_lid_3 398 439
IPR003959 ATPase_AAA_core 246 375
IPR003959 ATPase_AAA_core 519 652
IPR004201 Cdc48_dom2 132 196
No external refs found!