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  5. Zm00001e001657_P002

Zm00001e001657_P002 (Zm00001e001657)


Aliases : Zm00001e001657

Description : NUP93 scaffold nucleoporin of nuclear pore complex


Gene families : OG0006460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e001657_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00047780 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
AT2G41620 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.02 OrthoFinder output from all 47 species
Adi_g106187 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Aob_g15307 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene30364.t1 Aspi01Gene30364 scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048974 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species
Ceric.09G068400.1 Ceric.09G068400 scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Cre17.g717800 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species
Gb_32484 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g22690.1 LOC_Os03g22690 NUP93 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Lfl_g21025 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.04 OrthoFinder output from all 47 species
MA_10435434g0020 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Mp2g23730.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Msp_g06019 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Ore_g15388 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Pir_g08600 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Pnu_g00844 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002616 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Sam_g19481 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.03 OrthoFinder output from all 47 species
Sam_g26058 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.04 OrthoFinder output from all 47 species
Smo177656 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Solyc04g016240.3.1 Solyc04g016240 NUP93 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Tin_g04163 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 310 913
No external refs found!