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  5. Zm00001e002482_P002

Zm00001e002482_P002 (SRO1, Zm00001e002482)


Aliases : SRO1, Zm00001e002482

Description : Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana (sp|q8ry59|rcd1_arath : 180.0)


Gene families : OG0000733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002482_P002
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT1G32230 AtRCD1, RCD1,... WWE protein-protein interaction domain protein family 0.12 OrthoFinder output from all 47 species
Adi_g056817 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g065990 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g08224 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Als_g44313 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g13070 SRO5 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g10442 No alias organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g27125 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g29470 SRO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G015900.1 SRO3, Ceric.03G015900 organellar-signalling mediator *(RCD1) & original... 0.07 OrthoFinder output from all 47 species
Ceric.27G043800.1 AtRCD1, RCD1,... not classified & original description: pacid=50606028... 0.04 OrthoFinder output from all 47 species
Ceric.29G059600.1 AtRCD1, RCD1,... not classified & original description: pacid=50625179... 0.06 OrthoFinder output from all 47 species
Dac_g11795 AtRCD1, RCD1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22889 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Dde_g17490 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Dde_g19324 SRO1 organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01013086001 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.04 OrthoFinder output from all 47 species
GSVIVT01013090001 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.03 OrthoFinder output from all 47 species
Gb_39925 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.03 OrthoFinder output from all 47 species
LOC_Os10g42710.1 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.12 OrthoFinder output from all 47 species
Lfl_g07371 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
MA_10426389g0020 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.02 OrthoFinder output from all 47 species
MA_5033617g0010 SRO1 Probable inactive poly [ADP-ribose] polymerase SRO1... 0.04 OrthoFinder output from all 47 species
Msp_g34783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18220 AtRCD1, RCD1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29371 No alias organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Solyc08g076420.3.1 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.04 OrthoFinder output from all 47 species
Tin_g07052 AtRCD1, RCD1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08708 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023927_P003 AtRCD1, RCD1,... Inactive poly [ADP-ribose] polymerase RCD1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022003 RST 508 572
No external refs found!