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  5. Zm00001e005433_P002

Zm00001e005433_P002 (Zm00001e005433)


Aliases : Zm00001e005433

Description : transcription factor (BBX-CO)


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005433_P002
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT5G57180 CIA2 chloroplast import apparatus 2 0.03 OrthoFinder output from all 47 species
Aev_g21583 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34755 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09487 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17463 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18419.t1 Aspi01Gene18419 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g034007 No alias CMF transcription factor & original description: CDS=693-2417 0.04 OrthoFinder output from all 47 species
Azfi_s0076.g037937 No alias CMF transcription factor & original description: CDS=1-2013 0.04 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Len_g09104 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g19670.1 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14853 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.02 OrthoFinder output from all 47 species
Solyc02g093590.3.1 Solyc02g093590 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Spa_g52289 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 17 59
IPR010402 CCT_domain 367 409
No external refs found!