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  5. Zm00001e009391_P001

Zm00001e009391_P001 (ARF1A1C, Zm00001e009391)


Aliases : ARF1A1C, Zm00001e009391

Description : ARF-GTPase


Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009391_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00110370 ATARFA1B, ARFA1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
AT1G10630 ATARFA1F, ARFA1F ADP-ribosylation factor A1F 0.05 OrthoFinder output from all 47 species
AT1G23490 ATARF1, ARF1,... ADP-ribosylation factor 1 0.03 OrthoFinder output from all 47 species
AT5G17060 ATARFB1B, ARFB1B ADP-ribosylation factor B1B 0.03 OrthoFinder output from all 47 species
Adi_g003699 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009716 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g098666 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110620 ATARFA1F, ARFA1F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G015600.1 ATARFA1B,... ARF-GTPase *(ARF1) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g15058 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017654001 ATARFA1F, ARFA1F Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
GSVIVT01028179001 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
LOC_Os01g59790.2 ATARFA1F,... ARF-GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os03g59740.1 ATARFA1B,... ARF-GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os07g12200.1 ARF1A1C, LOC_Os07g12200 ARF-GTPase 0.05 OrthoFinder output from all 47 species
Len_g03591 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22222 ATARF1, ARF1,... ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_167779g0010 ATARL1, ARF3, ARL1 ADP-ribosylation factor 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9371872g0010 ATARL1, ARF3, ARL1 ADP-ribosylation factor 1 OS=Brassica rapa subsp.... 0.03 OrthoFinder output from all 47 species
Mp7g13050.1 ATARFA1F, ARFA1F ARF-GTPase 0.03 OrthoFinder output from all 47 species
Pp3c10_20740V3.1 ARFA1E,... ADP-ribosylation factor A1E 0.02 OrthoFinder output from all 47 species
Pp3c12_14910V3.1 ARFA1E,... ADP-ribosylation factor A1E 0.04 OrthoFinder output from all 47 species
Solyc01g100870.3.1 ARF1A1C, Solyc01g100870 ARF-GTPase 0.03 OrthoFinder output from all 47 species
Spa_g49718 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 7 177
No external refs found!