Zm00001e013191_P001 (ARF19, IAA22, ARF11,...)

Aliases : ARF19, IAA22, ARF11, Zm00001e013191

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e013191_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00141830	HSS, ARF1-BP,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AMTR_s00061p00078220	ARF21,...	Putative auxin response factor 21 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT1G59750	ARF1	auxin response factor 1	0.03	OrthoFinder output from all 47 species
AT1G77850	ARF17	auxin response factor 17	0.03	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g103241	TIR5, MSG1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06038	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32730	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g40259	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g41559	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g27918	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14401	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26256	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05878.t1	ARF8, ATARF8,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene38983.t1	ARF16, Aspi01Gene38983	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64733.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G049600.1	ARF10, Ceric.03G049600	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08691	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011008001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01032251001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_17830	ARF3, ETT	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_18738	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_32864	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os08g40900.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g11557	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03495	ARF6	ARF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g05750	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10432528g0010	ARF4	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Msp_g14175	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g50796	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g031970.4.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc05g047460.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g26009	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014833_P002	ARF1, Zm00001e014833	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e020205_P004	ARF3, ETT, Zm00001e020205	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	140	241
IPR033389	AUX/IAA_dom	1018	1104
IPR010525	ARF_dom	266	349

External Links

No external refs found!

Zm00001e013191_P001 (ARF19, IAA22, ARF11,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation