Aliases : Zm00001e013363
Description : histone demethylase (KDM5). transcription factor (JUMONJI)
Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e013363_P002 | |
| Cluster | HCCA: Cluster_5 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00253500 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.02 | OrthoFinder output from all 47 species | |
| AT4G20400 | PKDM7B, JMJ14 | JUMONJI 14 | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06155 | PKDM7D | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g15008 | No alias | histone demethylase *(KDM5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g17236 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0103.g044628 | PKDM7D | histone demethylase *(PKDM7) & original description: CDS=238-3396 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g01359 | No alias | histone demethylase *(KDM5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01023517001 | PKDM7D | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27431 | PKDM7D | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18977 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Mp8g17910.1 | No alias | histone demethylase (KDM5). transcription factor (JUMONJI) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g13349 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g44658 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g58500 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11634 | No alias | histone demethylase *(KDM5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g22787 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g21977 | PKDM7D | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | HCCA |
| BP | GO:0006497 | protein lipidation | IEP | HCCA |
| BP | GO:0006505 | GPI anchor metabolic process | IEP | HCCA |
| BP | GO:0006506 | GPI anchor biosynthetic process | IEP | HCCA |
| BP | GO:0006643 | membrane lipid metabolic process | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
| BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | HCCA |
| BP | GO:0006664 | glycolipid metabolic process | IEP | HCCA |
| BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0009247 | glycolipid biosynthetic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| CC | GO:0031090 | organelle membrane | IEP | HCCA |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
| BP | GO:0045017 | glycerolipid biosynthetic process | IEP | HCCA |
| BP | GO:0046467 | membrane lipid biosynthetic process | IEP | HCCA |
| BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1903509 | liposaccharide metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003347 | JmjC_dom | 483 | 599 |
| IPR019787 | Znf_PHD-finger | 312 | 358 |
| IPR019787 | Znf_PHD-finger | 1761 | 1805 |
| IPR013637 | Lys_sp_deMease-like_dom | 1007 | 1246 |
| IPR013637 | Lys_sp_deMease-like_dom | 958 | 1048 |
| IPR013637 | Lys_sp_deMease-like_dom | 1370 | 1617 |
| IPR001606 | ARID_dom | 90 | 184 |
| IPR003349 | JmjN | 19 | 52 |
| IPR004198 | Znf_C5HC2 | 692 | 742 |
| No external refs found! |
