Aliases : ARF19, IAA22, ARF11, Zm00001e013639
Description : transcription factor (ARF)
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e013639_P001 | |
| Cluster | HCCA: Cluster_51 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00198750 | ARF19, IAA22,... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00141830 | HSS, ARF1-BP,... | RNA biosynthesis.transcriptional activation.B3... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00092p00072950 | ARF6,... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00148p00046020 | ARF16,... | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00155p00082980 | ARF16,... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00211p00025860 | MP, IAA24, ARF5,... | RNA biosynthesis.transcriptional activation.B3... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G59750 | ARF1 | auxin response factor 1 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G61830 | ARF18 | auxin response factor 18 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G23980 | ARF9 | auxin response factor 9 | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g003670 | ARF6 | ARF-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g011925 | ARF6 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g084657 | ARF19, IAA22, ARF11 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06038 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g08441 | ARF10 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g13048 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g26950 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11834 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g34662 | ARF1 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g11014 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32218 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32717 | ARF8, ATARF8 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33091 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g41559 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g49574 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g07961 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g22072 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08752 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene33428.t1 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene46203.t1 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene46204.t2 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0384.g067487 | ARF8, ATARF8 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g09882 | ARF1 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.18G060100.1 | ARF1, Ceric.18G060100 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.20G087500.1 | ARF1, Ceric.20G087500 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G022300.1 | ARF6, Ceric.30G022300 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07132 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g08665 | ARF16 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g19338 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09257 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g18587 | ARF16 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g26859 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g27083 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g27139 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g27900 | ARF6 | ARF-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g30682 | ARF10 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01003591001 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020805001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01032251001 | ARF19, IAA22, ARF11 | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_17831 | ARF4 | Auxin response factor 4 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_25507 | ARF16 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_32864 | ARF6 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_33804 | ARF16 | transcription factor (ARF) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os02g06910.1 | ARF6, LOC_Os02g06910 | transcription factor (ARF) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g36054.1 | ARF1, LOC_Os04g36054 | transcription factor (ARF) | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os04g56850.1 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g57610.1 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g48870.1 | ARF3, ETT, LOC_Os05g48870 | transcription factor (ARF) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os11g32110.1 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.1 | OrthoFinder output from all 47 species | |
| Lfl_g07072 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07818 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_2237g0020 | ARF16 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13395 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g16463 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g13886 | ARF16 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g04470 | ARF1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g35318 | ARF3, ETT | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g50454 | TIR5, MSG1,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g25925 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0204.g025692 | ARF10 | ARF-type transcription factor & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g04406 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g16405 | No alias | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g19673 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g28812 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g49898 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo181406 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g103050.3.1 | ARF1, Solyc01g103050 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g075150.3.1 | ARF16, Solyc06g075150 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc07g016180.3.1 | ARF19, IAA22,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc08g008380.4.1 | ARF9, Solyc08g008380 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g042070.3.1 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e006577_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e016366_P002 | ARF11, Zm00001e016366 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e018165_P001 | ARF8, ATARF8,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e020205_P004 | ARF3, ETT, Zm00001e020205 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e025163_P001 | ARF6, Zm00001e025163 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e039552_P004 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
| BP | GO:0009725 | response to hormone | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| No external refs found! |
