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  5. Zm00001e013804_P001

Zm00001e013804_P001 (ATCOL5, COL5, Zm00001e013804)


Aliases : ATCOL5, COL5, Zm00001e013804

Description : Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana (sp|q9fhh8|col5_arath : 117.0)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013804_P001
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 COL2, ATCOL2,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Adi_g024051 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04849 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009656 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=186-1232 0.05 OrthoFinder output from all 47 species
Cba_g04402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G041500.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g14175 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03545 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06754 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22951 ATCOL4, COL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Gb_41704 ATCOL4, COL4 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os02g08150.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os04g42020.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os06g44450.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os08g15050.1 ATCOL5, COL5,... no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os09g06464.1 COL2, ATCOL2,... Zinc finger protein CO3 OS=Oryza sativa subsp. japonica... 0.09 OrthoFinder output from all 47 species
LOC_Os10g41100.1 ATCOL5, COL5,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Ore_g20271 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34612 ATCOL4, COL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01588 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10567 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005340 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=210-1442 0.04 OrthoFinder output from all 47 species
Smo102902 COL2, ATCOL2 Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Spa_g06394 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.06 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030410 nicotianamine synthase activity IEP HCCA
BP GO:0030417 nicotianamine metabolic process IEP HCCA
BP GO:0030418 nicotianamine biosynthetic process IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0072351 tricarboxylic acid biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 283 325
IPR000315 Znf_B-box 52 98
No external refs found!