Zm00001e014377_P001 (ATPUB17, PUB17, Zm00001e014377)

Aliases : ATPUB17, PUB17, Zm00001e014377

Description : U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica (sp|q6euk7|pub04_orysj : 992.0)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e014377_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT3G01400	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
AT3G46510	PUB13, ATPUB13	plant U-box 13	0.04	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g025518	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057744	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g059681	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g05890	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03476	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g00384	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05472	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g60695	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09286.t1	Aspi01Gene09286	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene31832.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43159.t1	PUB14, ATPUB14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44182.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44183.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44184.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44185.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0060.g034769	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1-2214	0.02	OrthoFinder output from all 47 species
Cba_g04504	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14644	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.08G025200.1	Ceric.08G025200	not classified & original description: pacid=50638798...	0.03	OrthoFinder output from all 47 species
Ceric.10G010200.1	Ceric.10G010200	not classified & original description: pacid=50612946...	0.02	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000215.128	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.01	OrthoFinder output from all 47 species
Cre03.g178550	No alias	Dynein assembly factor with WDR repeat domains 1...	0.02	OrthoFinder output from all 47 species
Dac_g23493	PUB18, ATPUB18	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g26730	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01009347001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01016225001	PUB14, ATPUB14	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01023893001	PUB15	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01036669001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_07614	PUB8, B80	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Gb_29129	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	OrthoFinder output from all 47 species
LOC_Os02g13960.1	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Lfl_g05609	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
MA_129765g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	OrthoFinder output from all 47 species
MA_84321g0010	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
MA_85119g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Msp_g14639	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g00644	PUB12, AtPUB12	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25238	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28901	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g10888	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11319	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g30213	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g35847	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g02760	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11362	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Smo113592	No alias	U-box domain-containing protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
Solyc05g008230.3.1	Solyc05g008230	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Solyc09g018230.1.1	Solyc09g018230	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc11g008390.2.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Spa_g07376	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g01104	No alias	E3 ubiquiTin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g07352	ATPUB17, PUB17	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21993	PUB13, ATPUB13	E3 ubiquiTin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	298	365
IPR000225	Armadillo	433	470

External Links

No external refs found!

Zm00001e014377_P001 (ATPUB17, PUB17, Zm00001e014377)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation