Zm00001e015164_P002 (ARF10, Zm00001e015164)

Aliases : ARF10, Zm00001e015164

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e015164_P002

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00267580	ARF19, IAA22,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00036p00215270	ARF21,...	Auxin response factor 7 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
AMTR_s00148p00046020	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.02	OrthoFinder output from all 47 species
AT1G30330	ARF6	auxin response factor 6	0.01	OrthoFinder output from all 47 species
AT1G34310	ARF12	auxin response factor 12	0.01	OrthoFinder output from all 47 species
AT1G34410	ARF21	auxin response factor 21	0.01	OrthoFinder output from all 47 species
AT1G35520	ARF15	auxin response factor 15	0.02	OrthoFinder output from all 47 species
AT1G59750	ARF1	auxin response factor 1	0.02	OrthoFinder output from all 47 species
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.03	OrthoFinder output from all 47 species
Adi_g061151	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080414	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene27221.t1	ARF16, Aspi01Gene27221	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene66818.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Azfi_s0433.g069577	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Azfi_s0697.g082598	ARF16	ARF-type transcription factor & original description: CDS=1-2376	0.04	OrthoFinder output from all 47 species
Cba_g11871	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g22311	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.29G070000.1	ARF6, Ceric.29G070000	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
GSVIVT01021553001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.07	OrthoFinder output from all 47 species
GSVIVT01032251001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os01g13520.1	ARF11, LOC_Os01g13520	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
LOC_Os04g56850.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.01	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os12g29520.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os12g41950.1	ARF6, LOC_Os12g41950	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g28161	ARF16	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g14944	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10257	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: CDS=1-3501	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Sam_g08676	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g031970.4.1	ARF8, ATARF8,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Solyc03g113410.2.1	ARF11, Solyc03g113410	Auxin response factor 9 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	275	358
IPR003340	B3_DNA-bd	123	224

External Links

No external refs found!

Zm00001e015164_P002 (ARF10, Zm00001e015164)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation