Zm00001e015303_P001 (ATRAB1B, RABD2A,...)

Aliases : ATRAB1B, RABD2A, ATRABD2A, ARA5, RA-5, ARA-5, Zm00001e015303

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e015303_P001
Cluster	HCCA: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
AT5G47200	ATRAB1A, ATRABD2B, RAB1A	RAB GTPase homolog 1A	0.04	OrthoFinder output from all 47 species
Adi_g010705	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g013330	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g046907	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g105164	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g45762	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09984	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023703	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: CDS=1-693	0.03	OrthoFinder output from all 47 species
Cba_g55676	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.39G002700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.10	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
Cre12.g560150	ATRAB1A, ATRABD2B, RAB1A	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dac_g02612	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g23024	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g35830	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g31403	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_37705	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os01g08450.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os02g43690.3	ATRAB1B, RABD2A,...	GTP-binding protein YPTM2 OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Len_g10682	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Mp2g23010.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Mp3g00710.1	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Msp_g10383	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g14298	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g01990	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c10_190V3.1	ATRAB1B, RABD2A,...	RAS 5	0.01	OrthoFinder output from all 47 species
Ppi_g05020	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Smo228158	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Solyc01g103370.3.1	ATFP8, RABD1,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Spa_g05573	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

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Zm00001e015303_P001 (ATRAB1B, RABD2A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation