Aliases : CLPP6, NCLPP1, NCLPP6, Zm00001e016157
Description : proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex
Gene families : OG0006579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006579_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e016157_P003 | |
| Cluster | HCCA: Cluster_114 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00059p00080590 | CLPP6, NCLPP1,... | Protein degradation.peptidase families.serine-type... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G11750 | CLPP6, NCLPP1, NCLPP6 | CLP protease proteolytic subunit 6 | 0.03 | OrthoFinder output from all 47 species | |
| Als_g13136 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g11501 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene53023.t1 | CLPP6, NCLPP1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g02386 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z076900.1 | CLPP6, NCLPP1,... | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Cre06.g299650 | NCLPP1, CLPP5, NCLPP5 | ATP-dependent Clp protease proteolytic subunit 6,... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g10453 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g00383 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01031936001 | CLPP6, NCLPP1, NCLPP6 | Protein degradation.peptidase families.serine-type... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_39858 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component ClpP1/3-6 of chloroplast... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os03g29810.1 | CLPP6, NCLPP1,... | proteolytic core component ClpP1/3-6 of chloroplast... | 0.12 | OrthoFinder output from all 47 species | |
| Len_g09909 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g05845 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| MA_55906g0010 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component ClpP1/3-6 of chloroplast... | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g17530.1 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component ClpP1/3-6 of chloroplast... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g06239 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g07340 | No alias | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g40789 | No alias | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g051310.2.1 | CLPP6, NCLPP1,... | proteolytic core component ClpP1/3-6 of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g00289 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0042802 | identical protein binding | IEP | HCCA |
| MF | GO:0042803 | protein homodimerization activity | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0051087 | chaperone binding | IEP | HCCA |
| MF | GO:0060590 | ATPase regulator activity | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |
