Zm00001e016281_P001 (LPA66, Zm00001e016281)


Aliases : LPA66, Zm00001e016281

Description : Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana (sp|q683i9|pp295_arath : 298.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016281_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g022088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08381 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g39832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04934 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29262 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18764 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47940 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24377 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_10270 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Gb_33411 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11470.1 LOC_Os01g11470 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g02780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08485 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18592 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26564 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06887 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011022 No alias not classified & original description: CDS=1-2751 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.03 OrthoFinder output from all 47 species
Smo80365 CRR2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04672 SLO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 368 393
IPR002885 Pentatricopeptide_repeat 190 218
IPR002885 Pentatricopeptide_repeat 265 285
IPR002885 Pentatricopeptide_repeat 160 188
IPR002885 Pentatricopeptide_repeat 440 462
IPR002885 Pentatricopeptide_repeat 294 340
No external refs found!