1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e016402_P001

Zm00001e016402_P001 (Zm00001e016402)


Aliases : Zm00001e016402

Description : component eIF3l of eIF3 mRNA-to-PIC binding complex


Gene families : OG0004705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004705_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016402_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00071210 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
AT5G25757 No alias RNA polymerase I-associated factor PAF67 0.02 OrthoFinder output from all 47 species
Aev_g06648 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Ala_g15257 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Als_g01743 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Aob_g01894 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Aop_g00719 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene21773.t1 Aspi01Gene21773 component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g024996 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.08 OrthoFinder output from all 47 species
Ceric.03G028800.1 Ceric.03G028800 component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.15 No alias Protein biosynthesis.translation... 0.04 OrthoFinder output from all 47 species
Cre17.g697450 No alias Protein biosynthesis.translation... 0.06 OrthoFinder output from all 47 species
Dac_g02249 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Dcu_g05568 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
GSVIVT01035660001 No alias Protein biosynthesis.translation... 0.07 OrthoFinder output from all 47 species
Gb_07559 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.07 OrthoFinder output from all 47 species
LOC_Os01g12870.1 LOC_Os01g12870 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.05 OrthoFinder output from all 47 species
LOC_Os05g13950.1 LOC_Os05g13950 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.12 OrthoFinder output from all 47 species
MA_4833g0010 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.06 OrthoFinder output from all 47 species
Mp3g02920.1 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.09 OrthoFinder output from all 47 species
Ore_g09994 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g07496 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Sam_g26742 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.08 OrthoFinder output from all 47 species
Smo146079 No alias Protein biosynthesis.translation... 0.1 OrthoFinder output from all 47 species
Solyc08g068340.3.1 Solyc08g068340 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.16 OrthoFinder output from all 47 species
Spa_g01339 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.08 OrthoFinder output from all 47 species
Spa_g43394 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Tin_g07453 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR019382 eIF3l 113 509
No external refs found!