Aliases : Zm00001e016831
Description : SSU processome assembly factor (UTP10)
Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e016831_P001 | |
| Cluster | HCCA: Cluster_183 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00089410 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AT3G06530 | No alias | ARM repeat superfamily protein | 0.28 | OrthoFinder output from all 47 species | |
| Adi_g117341 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g19835 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g39223 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene50223.t1 | Aspi01Gene50223 | SSU processome assembly factor *(UTP10) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene50228.t1 | Aspi01Gene50228 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0335.g065507 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g23591 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.35G057300.1 | Ceric.35G057300 | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cre12.g548000 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g07825 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07784 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Dde_g10509 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g26136 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01013976001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.19 | OrthoFinder output from all 47 species | |
| Gb_31968 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31975 | No alias | SSU processome assembly factor (UTP10) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g46310.1 | LOC_Os04g46310 | SSU processome assembly factor (UTP10) | 0.19 | OrthoFinder output from all 47 species | |
| Lfl_g18330 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10431891g0010 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.09 | OrthoFinder output from all 47 species | |
| MA_735g0010 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g06160.1 | No alias | SSU processome assembly factor (UTP10) | 0.12 | OrthoFinder output from all 47 species | |
| Pir_g09831 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g32298 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0089.g018710 | No alias | phosphatidylinositol 4-kinase *(PI4K-gamma) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g04467 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g27886 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g40580 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Smo438493 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
| Solyc03g093480.3.1 | Solyc03g093480 | SSU processome assembly factor (UTP10) | 0.16 | OrthoFinder output from all 47 species | |
| Spa_g26502 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g20111 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |
