Aliases : Zm00001e018034
Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein
Gene families : OG0003009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003009_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e018034_P004 | |
| Cluster | HCCA: Cluster_120 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g48943 | No alias | endomembrane trafficking ATG6-stability regulator... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001366.11 | UBP13 | Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os01g56800.1 | LOC_Os01g56800 | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os12g40520.1 | LOC_Os12g40520 | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g15370 | No alias | endomembrane trafficking ATG6-stability regulator... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e003140_P001 | Zm00001e003140 | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016556 | mRNA modification | IEP | HCCA |
| CC | GO:0030176 | obsolete integral component of endoplasmic reticulum membrane | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| BP | GO:0080009 | mRNA methylation | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002083 | MATH/TRAF_dom | 82 | 199 |
| No external refs found! |
