Zm00001e018890_P004 (ATDCL3, DCL3, Zm00001e018890)

Aliases : ATDCL3, DCL3, Zm00001e018890

Description : endoribonuclease (DCL3)

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e018890_P004

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00026p00051870	DCL4, ATDCL4,...	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.02	OrthoFinder output from all 47 species
AMTR_s00033p00127000	ATDCL3, DCL3,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	OrthoFinder output from all 47 species
AT1G01040	DCL1, CAF,...	dicer-like 1	0.04	OrthoFinder output from all 47 species
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.03	OrthoFinder output from all 47 species
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.07	OrthoFinder output from all 47 species
Adi_g022447	DCL1, CAF,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Aev_g13800	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Aev_g37944	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Als_g09756	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Aob_g19967	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Aop_g06264	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32282.t1	DCL4, ATDCL4,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0154.g053526	DCL1, CAF,...	not classified & original description: CDS=655-2703	0.03	OrthoFinder output from all 47 species
Ceric.01G108700.1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.06	OrthoFinder output from all 47 species
Ceric.1Z277300.1	DCL1, CAF,...	not classified & original description: pacid=50600427...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000741.30	DCL1, CAF,...	No description available	0.01	OrthoFinder output from all 47 species
Cre07.g345900	DCL1, CAF,...	No description available	0.02	OrthoFinder output from all 47 species
Dac_g43749	DCL1, CAF,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g13692	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Dcu_g36083	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
GSVIVT01035494001	ATDCL3, DCL3	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
GSVIVT01037698001	ATRTL2, RTL2	RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III...	0.02	OrthoFinder output from all 47 species
Gb_34257	DCL4, ATDCL4	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
LOC_Os01g68120.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.1	OrthoFinder output from all 47 species
LOC_Os03g02970.1	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
LOC_Os04g43050.1	DCL4, ATDCL4,...	endoribonuclease (DCL4)	0.06	OrthoFinder output from all 47 species
LOC_Os10g34430.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.02	OrthoFinder output from all 47 species
Len_g14815	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g35714	DCL1, CAF,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436812g0020	DCL4, ATDCL4	Dicer-like protein 4 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10437243g0010	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
MA_108060g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Mp7g11720.1	DCL4, ATDCL4	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.02	OrthoFinder output from all 47 species
Nbi_g07904	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Ore_g16091	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Ppi_g29457	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Smo444049	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	OrthoFinder output from all 47 species
Smo74321	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.06	OrthoFinder output from all 47 species
Solyc08g067200.2.1	ATDCL3, DCL3,...	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Solyc08g067210.3.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.04	OrthoFinder output from all 47 species
Spa_g28946	DCL1, CAF,...	endoribonuclease *(DCL3) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g29214	DCL4, ATDCL4	endoribonuclease (DCL4) of transacTing siRNA pathway &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	427	528
IPR000999	RNase_III_dom	1288	1399
IPR000999	RNase_III_dom	1077	1211
IPR005034	Dicer_dimerisation_dom	599	685
IPR006935	Helicase/UvrB_N	53	207
IPR003100	PAZ_dom	909	1037

External Links

No external refs found!

Zm00001e018890_P004 (ATDCL3, DCL3, Zm00001e018890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation