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  5. Zm00001e020148_P003

Zm00001e020148_P003 (ATO, Zm00001e020148)


Aliases : ATO, Zm00001e020148

Description : component SF3A3 of splicing factor 3A complex


Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020148_P003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00243200 ATO,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Aob_g07243 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Aop_g07359 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011344 ATO component *(SF3A3) of splicing factor 3A complex &... 0.04 OrthoFinder output from all 47 species
Ceric.22G050500.1 ATO, Ceric.22G050500 component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Cre06.g297750 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g10840 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g03870 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01038711001 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
MA_10432243g0010 ATO component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species
MA_10435481g0010 ATO component SF3A3 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species
Mp4g20400.1 ATO component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species
Ore_g19243 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g07362 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023308 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
Smo169846 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Solyc03g083430.3.1 ATO, Solyc03g083430 component SF3A3 of splicing factor 3A complex 0.05 OrthoFinder output from all 47 species
Tin_g06550 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR031774 SF3A3_dom 126 205
IPR021966 SF3a60_bindingd 86 105
IPR024598 SF3a60/Prp9_C 325 503
No external refs found!