Zm00001e020770_P002 (PGP11, Zm00001e020770)

Aliases : PGP11, Zm00001e020770

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e020770_P002

Target	Alias	Description	ECC score	Gene Family Method
AT1G02530	PGP12	P-glycoprotein 12	0.02	OrthoFinder output from all 47 species
AT1G10680	PGP10	P-glycoprotein 10	0.03	OrthoFinder output from all 47 species
Aop_g68609	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g59935	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12633	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g25899	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26046	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g33169	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g46023	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01036801001	No alias	ABC transporter B family member 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_08615	PGP11	ABC transporter B family member 4 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Gb_08616	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Gb_08702	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_13908	PGP10	ABC transporter B family member 10 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_36497	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os02g46680.1	PGP2, LOC_Os02g46680	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_8945353g0010	ABCB19,...	ABC transporter B family member 19 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g38310	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42482	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04029	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004568	chitinase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006030	chitin metabolic process	IEP	HCCA
BP	GO:0006032	chitin catabolic process	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0046348	amino sugar catabolic process	IEP	HCCA
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	HCCA
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	403	551
IPR003439	ABC_transporter-like_ATP-bd	1101	1248
IPR011527	ABC1_TM_dom	63	335
IPR011527	ABC1_TM_dom	728	996

External Links

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Zm00001e020770_P002 (PGP11, Zm00001e020770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation