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  5. Zm00001e023289_P001

Zm00001e023289_P001 (Zm00001e023289)


Aliases : Zm00001e023289

Description : Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana (sp|q9c6t2|ppr68_arath : 509.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023289_P001
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Adi_g014239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17011 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g39090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20359 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02312.t1 Aspi01Gene02312 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02406.t1 Aspi01Gene02406 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04185.t1 Aspi01Gene04185 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10220.t1 OTP84, Aspi01Gene10220 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10387.t1 REME1, Aspi01Gene10387 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17592.t1 Aspi01Gene17592 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35079.t1 Aspi01Gene35079 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37377.t1 Aspi01Gene37377 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38583.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40269.t1 Aspi01Gene40269 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41675.t1 CRR2, Aspi01Gene41675 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51368.t2 CRR22, Aspi01Gene51368 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene69211.t1 Aspi01Gene69211 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007907 No alias not classified & original description: CDS=160-2841 0.02 OrthoFinder output from all 47 species
Azfi_s4317.g118723 No alias ssDNA-binding protein *(OSB) & original description: CDS=173-1369 0.03 OrthoFinder output from all 47 species
Cba_g05214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05286 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19054 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30013 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43653 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g47996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21707 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43746 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028697001 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
Gb_09406 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Gb_17077 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.02 OrthoFinder output from all 47 species
Gb_17962 No alias RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Gb_18412 OTP84 Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Gb_21567 CRR22 RNA editing factor (MEF19) 0.02 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
Len_g04137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28860 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g38488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05438 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07376 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07380 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10692 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36261 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Msp_g03167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31919 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27667 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29294 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57720 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15871 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09076 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012420 No alias not classified & original description: CDS=519-2384 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019336 No alias not classified & original description: CDS=1-1245 0.02 OrthoFinder output from all 47 species
Sam_g17942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036537_P001 Zm00001e036537 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 444
IPR002885 Pentatricopeptide_repeat 385 408
IPR002885 Pentatricopeptide_repeat 212 240
IPR002885 Pentatricopeptide_repeat 284 309
IPR002885 Pentatricopeptide_repeat 310 357
IPR032867 DYW_dom 483 607
No external refs found!