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  5. Zm00001e023743_P001

Zm00001e023743_P001 (RPT1A, Zm00001e023743)


Aliases : RPT1A, Zm00001e023743

Description : regulatory component RPT1 of 26S proteasome


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023743_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G53750 RPT1A regulatory particle triple-A 1A 0.03 OrthoFinder output from all 47 species
Adi_g060638 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aev_g11650 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031375 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cba_g07403 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cba_g78469 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ceric.30G008600.1 RPT1A, Ceric.30G008600 regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.16 RPT1A Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Cre14.g625400 RPT1A Protein degradation.26S proteasome.regulatory... 0.14 OrthoFinder output from all 47 species
Dcu_g01171 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Dde_g03314 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Gb_11942 RPT1A regulatory component RPT1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Gb_26075 RPT1A regulatory component RPT1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os02g54340.1 RPT1A, LOC_Os02g54340 regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
LOC_Os06g09290.2 RPT1A, LOC_Os06g09290 regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Len_g10926 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
MA_10435556g0010 RPT1A regulatory component RPT1 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Mp2g04840.1 RPT1A regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Msp_g08271 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Nbi_g10523 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pir_g41342 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pp3c20_1430V3.1 RPT1A, Pp3c20_1430 regulatory particle triple-A 1A 0.02 OrthoFinder output from all 47 species
Smo146742 RPT1A Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Solyc03g123730.4.1 RPT1A, Solyc03g123730 regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Solyc06g063140.4.1 RPT1A, Solyc06g063140 regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Spa_g06127 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 205 337
IPR041569 AAA_lid_3 360 403
No external refs found!