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  5. Zm00001e023806_P001

Zm00001e023806_P001 (Zm00001e023806)


Aliases : Zm00001e023806

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 134.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023806_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G60360 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Ceric.16G037300.1 Ceric.16G037300 not classified & original description: pacid=50589925... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.7 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
LOC_Os02g52870.1 LOC_Os02g52870 Probable E3 ubiquitin-protein ligase RHC1A... 0.08 OrthoFinder output from all 47 species
Len_g47682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03286 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
MA_413614g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g52386 No alias E3 ubiquitin ligase *(SNIPER) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 228 270
IPR039525 RNF126-like_zinc-ribbon 53 85
No external refs found!