1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e024908_P001

Zm00001e024908_P001 (ATPUB17, PUB17, Zm00001e024908)


Aliases : ATPUB17, PUB17, Zm00001e024908

Description : U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica (sp|q6euk7|pub04_orysj : 903.0)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024908_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.06 OrthoFinder output from all 47 species
AT3G07360 PUB9, ATPUB9 plant U-box 9 0.04 OrthoFinder output from all 47 species
Aev_g01975 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.02 OrthoFinder output from all 47 species
Cba_g00725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03925 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024985001 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_85119g0010 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Msp_g14639 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14682 ATPUB45, PUB45 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11795 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g03488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39035 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc11g066040.2.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016746 acyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 433 470
IPR003613 Ubox_domain 298 365
No external refs found!