Zm00001e025206_P001 (DRD3, ATNRPD1B,...)

Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5, Zm00001e025206

Description : subunit 1 of Pol V RNA polymerase

Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e025206_P001
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00131p00068700	DRD3, ATNRPD1B,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	OrthoFinder output from all 47 species
AT2G40030	DRD3, ATNRPD1B,...	nuclear RNA polymerase D1B	0.06	OrthoFinder output from all 47 species
Adi_g023510	DRD3, ATNRPD1B,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0024.g020355	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g05836	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g25284	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01013491001	DRD3, ATNRPD1B,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.08	OrthoFinder output from all 47 species
GSVIVT01019869001	NRPD1A, POL IVA,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
Gb_11654	NRPD1A, POL IVA,...	subunit 1 of Pol IV RNA polymerase	0.03	OrthoFinder output from all 47 species
Gb_21425	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os02g05880.1	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.09	OrthoFinder output from all 47 species
LOC_Os04g48370.1	NRPD1A, POL IVA,...	subunit 1 of Pol IV RNA polymerase	0.02	OrthoFinder output from all 47 species
Len_g20487	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.04	OrthoFinder output from all 47 species
MA_8720349g0010	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.04	OrthoFinder output from all 47 species
Mp6g00230.1	DRD3, ATNRPD1B,...	subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V...	0.02	OrthoFinder output from all 47 species
Msp_g21586	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g46354	NRPD1A, POL IVA,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Sam_g30181	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g096390.4.1	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.09	OrthoFinder output from all 47 species
Tin_g04757	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	485	627
IPR007081	RNA_pol_Rpb1_5	756	1181
IPR007080	RNA_pol_Rpb1_1	44	283
IPR000722	RNA_pol_asu	328	482

External Links

No external refs found!

Zm00001e025206_P001 (DRD3, ATNRPD1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation