Zm00001e027750_P001 (ATVTI13, VTI13, Zm00001e027750)

Aliases : ATVTI13, VTI13, Zm00001e027750

Description : VTI group Qb-type SNARE protein

Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e027750_P001

Target	Alias	Description	ECC score	Gene Family Method
AT5G39510	SGR4, ZIG1,...	Vesicle transport v-SNARE family protein	0.02	OrthoFinder output from all 47 species
Adi_g008512	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Aev_g00705	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Ala_g00976	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Als_g22401	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Aop_g25830	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Azfi_s0002.g001214	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Cre13.g577500	VTI12, VTI1B, ATVTI12	Vesicle trafficking.SNARE target membrane recognition...	0.03	OrthoFinder output from all 47 species
Dcu_g25235	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Ehy_g07395	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
LOC_Os01g37980.1	ATVTI13, VTI13,...	VTI group Qb-type SNARE protein	0.03	OrthoFinder output from all 47 species
Mp1g12970.1	SGR4, ZIG1,...	VTI group Qb-type SNARE protein	0.06	OrthoFinder output from all 47 species
Msp_g01840	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Nbi_g00258	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.06	OrthoFinder output from all 47 species
Nbi_g04578	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Pp3c11_5240V3.1	ATVTI13, VTI13,...	Vesicle transport v-SNARE family protein	0.04	OrthoFinder output from all 47 species
Ppi_g00504	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000290	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Smo146421	SGR4, ZIG1,...	Vesicle trafficking.SNARE target membrane recognition...	0.05	OrthoFinder output from all 47 species
Spa_g00661	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0045048	protein insertion into ER membrane	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007705	Vesicle_trsprt_v-SNARE_N	12	90

External Links

No external refs found!

Zm00001e027750_P001 (ATVTI13, VTI13, Zm00001e027750)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation