Zm00001e030290_P005 (ARF16, Zm00001e030290)

Aliases : ARF16, Zm00001e030290

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030290_P005
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
ATMG00940	ORF164	DNA binding	0.03	OrthoFinder output from all 47 species
Adi_g025684	ARF9	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06750	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20472	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08752	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g17748	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0185.g056651	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.07G060200.1	ARF16, Ceric.07G060200	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g07132	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g27139	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011008001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_31132	ARF4	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g47059	ARF6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_98506g0010	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g27620	ARF4	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g29453	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g30468	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g25925	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15530	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: CDS=1-3501	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740	TIR5, MSG1,...	ARF-type transcription factor & original description: CDS=1-2400	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Solyc01g103050.3.1	ARF1, Solyc01g103050	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc07g016180.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g39677	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023038_P001	ARF10, Zm00001e023038	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	280	363
IPR003340	B3_DNA-bd	121	222

External Links

No external refs found!

Zm00001e030290_P005 (ARF16, Zm00001e030290)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation